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RESOURCES
CORNELL FACILITIES
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TREx FACILITY (RNASEQ)
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DATABASES & WEB SERVERS
GENERAL TOOLS & DATABASES:
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G:PROFILER (CONVERT GENE OR PROTEIN IDS)
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DIOPT (ORTHOLOG FINDER)
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BIOPLEX (PROTEIN COMPLEXES)
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SITES WITH LISTINGS FOR MULTIPLE DATABASES & WEB SERVERS:
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ALLIANCE MINE (SEARCH GENES, PROTEINS, PATHWAYS, PHENOTYPES, LITERATURE)
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BIP SERVER (COLLECTION OF DATABASES & ANALYSIS PROGRAMS)
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DATABASE COMMONS (REGISTRY OF DATA REPOSITORIES)
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EMBL EUROPLEAN BIOINFORMATICS INSTITUTE (SEQUENCE ANALYSIS TOOLS
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YEAST DATABASES:
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SEQUENCE ALIGNMENT TOOLS:
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CLUSTAL OMEGA (SEQUENCE ALIGNMENT)
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PROTEIN STRUCTURE & STRUCTURE PREDICTION TOOLS & DATABASES:
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PROTEIN HOMOLOGY SEARCH:
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SECONDARY STRUCTURE:
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TERTIARY STRUCTURE PREDICTION:
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COACH-D (PROTEIN-LIGAND BINDING SITE PREDICTION)
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PHOBIUS (COMBINED TOPOLOGY AND SIGNAL PEPTIDE PREDICTOR)
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GENOME-FOCUSED DATABASES:
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GWIPS (GENOME BROWSER)
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CLADE-O-SCOPE (CO-EVOLUTION GENE RELATIONSHIPS)
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REDOX-FOCUSED DATABASES:
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LIPID-RELATED DATABASES:
YEAST RESOURCES
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COMMON LAB SACCHAROMYCES CEREVISIAE STRAIN INFO (S288C, W303, ETC)
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COMMON SACCHAROMYCES CEREVISIAE AUXOTROPHIC MARKER MUTATIONS
MOLECULAR BIOLOGY RESOURCES
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GENERAL CLONING-RELATED MANUALS:
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GUIDE TO MOLECULAR CLONING (ADDGENE)
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PLASMIDS 101 (ADDGENE) (INFO ABOUT CLONING, EPITOPE TAGS, STRAINS, ETC)
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CRISPR 101 (ADDGENE)
BACTERIAL STRAIN INFO:
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COMMON LAB BACTERIA GENOTYPES (FOCUSED ON STRAINS FOR CLONING)
SITE-DIRECTED MUTAGENESIS (QUIKCHANGE) MANUALS:
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AGILENT QUIKCHANGE MANUAL (BASIS FOR LAB QC PROTOCOL)
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AGILENT QUIKCHANGE MULTI MANUAL (BASIS FOR LAB MULTI-QC PROTOCOL)
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AGILENT QUIKCHANGE MULTI LIGHTNING MANUAL (PURCHASED KIT)
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OLIGO-DESIGN WEBSITES FOR QUIKCHANGE MUTAGENESIS:
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NEW ENGLAND BIOLABS STUFF:
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NEB RESTRICTION ENZYME BUFFER CHART (OLD BUFFER SYSTEM)
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NEB RESTRICTION ENZYME BUFFER CHART (NEW BUFFER SYSTEM)
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INTERACTIVE DOUBLE DIGEST BUFFER FINDER (NEW BUFFER SYSTEM)
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BIOCHEMISTRY RESOURCES
PROTEIN-EXPRESSION PLASMID INFO:
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BACTERIAL STRAINS (FOR PROTEIN EXPRESSION) INFO:
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BACTERIAL STRAINS FOR PROTEIN EXPRESSION (ADDGENE LIST - ALSO LISTS BACKGROUND INFO.)
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BACTERIAL STRAINS FOR PROTEIN EXPRESSION (WOLFSON CENTER LIST)
GE HEALTHCARE (CYTIVA) PROTEIN PURIFICATION HANDBOOKS:
BUFFER TABLES:
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pH VERSUS TEMPERATURE FOR TRIS (A GUIDELINE - CHECK ACTUAL pH WITH METER)
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DETERGENT INFORMATION:
PROTEIN INHIBITOR INFORMATION (INCLUDING PROTEASE INHIBITORS) :
THERMO SCIENTIFIC PIERCE TECHNICAL HANDBOOKS:
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PROTEIN ASSAYS (INCLUDES COMPATIBILITY TABLE)
ADDITIONAL HANDBOOKS / TABLES:
GENERAL LAB RESOURCES
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